Methodology: I went through the schedule week by week and picked the games. It was basically an exercise of "who would I favor in this game." As a result, the records skew high on top and low on bottom. The basic order holds true though.
AFC
1. Indianapolis 14-2
2. Denver 14-2
3. Pittsburgh 13-3
4. New England 13-3
5. Baltimore 12-4
6. San Diego
NFC
1. Green Bay 15-1
2. Seattle 13-3
3. Dallas 13-3
4. New Orleans 12-4
5. Philadelphia 12-4
6. Arizona 10-6
4 New England over 5 Baltimore
3 Pittsburgh over 6 San Diego
1 Indianapolis over 4 New England
2 Denver over 3 Pittsburgh
1 Indianapolis over 2 Denver
4 New Orleans over 5 Philadelphia
3 Dallas over 6 Arizona
1 Green Bay over 4 New Orleans
2 Seattle over 3 Dallas
1 Green Bay over 2 Seattle
1 Indianapolis over 1 Green Bay
AFC North
Pittsburgh 13-3
Baltimore 12-4
Cincinnati 7-9
Cleveland 2-14
AFC East
New England 13-3
Miami 9-7
Buffalo 8-8
New York Jets 3-13
AFC South
Indianapolis 14-2
Houston 8-8
Tennessee 5-11
Jacksonville 1-15
AFC West
Denver 14-2
San Diego 10-6
Kansas City 7-9
Oakland 1-15
NFC East
Dallas 13-3
Philadelphia 13-3
New York Giants 6-10
Washington 1-15
NFC South
New Orleans 12-4
Atlanta 10-6
Carolina 7-9
Tampa Bay 2-14
NFC North
Green Bay 15-1
Detroit 9-7
Minnesota 7-9
Chicago 5-11
NFC West
Seattle 13-3
Arizona 10-6
St. Louis 5-11
San Francisco 3-13